Normalizes all cells to have the same total counts
and computes log(1+x) transform.
Usage
normalize_data(A, scaling_factor = NULL)
Arguments
- A
A genes x cells counts matrix.
Must be convertible to dgCMatrix.
- scaling_factor
Number of total counts to normalize
all cells to. If NULL, then the median counts across
all cells is used. Defaults to NULL.
Value
Normalized genes x cells matrix in
dgCMatrix sparse matrix format.